If you're trying to xfer fuel with a full main, it won't work, because the high level shutoffs in the full main will turn off the transfer. You'd have to crossfeed a motor to burn down the high tank and then xfer. I'm gonna guess it corrected itself because you burned down some fuel in the high tank to the point where it would let you transfer fuel.
As for the starter, it's more than likely not a tron issue, but is probably a stuck valve somewhere in the pneumatic system allowing air to continue to flow to the starter.
NATOPS complete my butt....