I'm thinking paper charts will always be around because you can write on them and reconstruct the problem later.
I think everyone has had an issue with 'trons' getting lost at some point. (For example, technicians just found over 22K emails from the Bush Administration yesterday)
Since missions such as SAR, ASW and MIO rely on accurate recreation later on, I would suspect that every ship captain is going to have a paper copy of the event going in addition to whatever whiz-bang electronic creation the Navy comes up with next.
Make that 22 million recovered emails.